The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.
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Modern machine learning pipelines, in particular those based on deep learning (DL) models, require large amounts of labeled data. For classification problems, the most common learning paradigm consists of presenting labeled examples during training, thus providing strong supervision on what constitutes positive and negative samples. This constitutes a major obstacle for the development of DL models in radiology--in particular for cross-sectional imaging (e.g., computed tomography [CT] scans)--where labels must come from manual annotations by expert radiologists at the image or slice-level. These differ from examination-level annotations, which are coarser but cheaper, and could be extracted from radiology reports using natural language processing techniques. This work studies the question of what kind of labels should be collected for the problem of intracranial hemorrhage detection in brain CT. We investigate whether image-level annotations should be preferred to examination-level ones. By framing this task as a multiple instance learning problem, and employing modern attention-based DL architectures, we analyze the degree to which different levels of supervision improve detection performance. We find that strong supervision (i.e., learning with local image-level annotations) and weak supervision (i.e., learning with only global examination-level labels) achieve comparable performance in examination-level hemorrhage detection (the task of selecting the images in an examination that show signs of hemorrhage) as well as in image-level hemorrhage detection (highlighting those signs within the selected images). Furthermore, we study this behavior as a function of the number of labels available during training. Our results suggest that local labels may not be necessary at all for these tasks, drastically reducing the time and cost involved in collecting and curating datasets.
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Chest X-ray (CXR) datasets hosted on Kaggle, though useful from a data science competition standpoint, have limited utility in clinical use because of their narrow focus on diagnosing one specific disease. In real-world clinical use, multiple diseases need to be considered since they can co-exist in the same patient. In this work, we demonstrate how federated learning (FL) can be used to make these toy CXR datasets from Kaggle clinically useful. Specifically, we train a single FL classification model (`global`) using two separate CXR datasets -- one annotated for presence of pneumonia and the other for presence of pneumothorax (two common and life-threatening conditions) -- capable of diagnosing both. We compare the performance of the global FL model with models trained separately on both datasets (`baseline`) for two different model architectures. On a standard, naive 3-layer CNN architecture, the global FL model achieved AUROC of 0.84 and 0.81 for pneumonia and pneumothorax, respectively, compared to 0.85 and 0.82, respectively, for both baseline models (p>0.05). Similarly, on a pretrained DenseNet121 architecture, the global FL model achieved AUROC of 0.88 and 0.91 for pneumonia and pneumothorax, respectively, compared to 0.89 and 0.91, respectively, for both baseline models (p>0.05). Our results suggest that FL can be used to create global `meta` models to make toy datasets from Kaggle clinically useful, a step forward towards bridging the gap from bench to bedside.
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心血管疾病是全球死亡的主要原因,是一种与年龄有关的疾病。了解衰老期间心脏的形态和功能变化是一个关键的科学问题,其答案将有助于我们定义心血管疾病的重要危险因素并监测疾病进展。在这项工作中,我们提出了一种新型的条件生成模型,以描述衰老过程中心脏3D解剖学的变化。提出的模型是灵活的,可以将多个临床因素(例如年龄,性别)整合到生成过程中。我们在心脏解剖学的大规模横截面数据集上训练该模型,并在横截面和纵向数据集上进行评估。该模型在预测衰老心脏的纵向演化和对其数据分布进行建模方面表现出了出色的表现。
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尽管机器学习分类器越来越多地用于高风险决策(例如癌症诊断,刑事起诉决策),但他们表现出了针对代表性不足的群体的偏见。公平性的标准定义需要访问感兴趣的敏感属性(例如性别和种族),这通常不可用。在这项工作中,我们证明了在这些敏感属性未知的情况下,人们仍然可以通过使用从敏感属性预测因子得出的代理敏感属性来可靠地估计并最终控制公平性。具体来说,我们首先表明,只有对完整数据分布的了解,就可以使用敏感属性预测因子获得分类器真实公平度量的上和下限。其次,我们证明了如何通过控制代理敏感属性的公平性来证明人们如何证明对真实敏感属性的公平性。我们的结果在比以前的作品明显温和的假设下得出。我们在一系列合成和真实数据集上说明了结果。
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高质量的关节语音综合在语音科学和技术中具有许多潜在的应用。但是,将适当的映射从语言规范到关节手势是困难且耗时的。在本文中,我们构建了一个基于优化的框架,作为在不手动干预的情况下学习这些映射的第一步。我们证明了具有复杂的启用的音节的产生,并讨论了有关共插曲的关节手势的质量。
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大型语言模型已被证明可以使用少量学习来实现各种自然语言任务的出色表现,这大大减少了将模型调整到特定应用程序所需的特定任务培训示例的数量。为了进一步了解量表对少量学习的影响,我们培训了一个5400亿个参数,密集激活的变压器语言模型,我们称之为“途径”语言模型棕榈。我们使用Pathways在6144 TPU V4芯片上训练了Palm,这是一种新的ML系统,可在多个TPU POD上进行高效的训练。我们通过在数百种语言理解和产生基准的基准方面实现最先进的学习结果来证明扩展的持续好处。在这些任务中,Palm 540B实现了突破性的表现,在一系列多步推理任务上表现出色,超过了最新的最新表现,并且在最近发布的Big Benchmark上表现优于平均人类表现。大量的大型基础任务显示出与模型量表的不连续改进,这意味着当我们扩展到最大模型时,性能急剧增加。 Palm在多语言任务和源代码生成方面也具有很强的功能,我们在各种基准测试中证明了这一点。我们还提供了有关偏见和毒性的全面分析,并研究了训练数据记忆的程度,相对于模型量表。最后,我们讨论与大语言模型有关的道德考虑,并讨论潜在的缓解策略。
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The success of neural networks builds to a large extent on their ability to create internal knowledge representations from real-world high-dimensional data, such as images, sound, or text. Approaches to extract and present these representations, in order to explain the neural network's decisions, is an active and multifaceted research field. To gain a deeper understanding of a central aspect of this field, we have performed a targeted review focusing on research that aims to associate internal representations with human understandable concepts. In doing this, we added a perspective on the existing research by using primarily deductive nomological explanations as a proposed taxonomy. We find this taxonomy and theories of causality, useful for understanding what can be expected, and not expected, from neural network explanations. The analysis additionally uncovers an ambiguity in the reviewed literature related to the goal of model explainability; is it understanding the ML model or, is it actionable explanations useful in the deployment domain?
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Many problems in machine learning involve bilevel optimization (BLO), including hyperparameter optimization, meta-learning, and dataset distillation. Bilevel problems consist of two nested sub-problems, called the outer and inner problems, respectively. In practice, often at least one of these sub-problems is overparameterized. In this case, there are many ways to choose among optima that achieve equivalent objective values. Inspired by recent studies of the implicit bias induced by optimization algorithms in single-level optimization, we investigate the implicit bias of gradient-based algorithms for bilevel optimization. We delineate two standard BLO methods -- cold-start and warm-start -- and show that the converged solution or long-run behavior depends to a large degree on these and other algorithmic choices, such as the hypergradient approximation. We also show that the inner solutions obtained by warm-start BLO can encode a surprising amount of information about the outer objective, even when the outer parameters are low-dimensional. We believe that implicit bias deserves as central a role in the study of bilevel optimization as it has attained in the study of single-level neural net optimization.
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An expansion of aberrant brain cells is referred to as a brain tumor. The brain's architecture is extremely intricate, with several regions controlling various nervous system processes. Any portion of the brain or skull can develop a brain tumor, including the brain's protective coating, the base of the skull, the brainstem, the sinuses, the nasal cavity, and many other places. Over the past ten years, numerous developments in the field of computer-aided brain tumor diagnosis have been made. Recently, instance segmentation has attracted a lot of interest in numerous computer vision applications. It seeks to assign various IDs to various scene objects, even if they are members of the same class. Typically, a two-stage pipeline is used to perform instance segmentation. This study shows brain cancer segmentation using YOLOv5. Yolo takes dataset as picture format and corresponding text file. You Only Look Once (YOLO) is a viral and widely used algorithm. YOLO is famous for its object recognition properties. You Only Look Once (YOLO) is a popular algorithm that has gone viral. YOLO is well known for its ability to identify objects. YOLO V2, V3, V4, and V5 are some of the YOLO latest versions that experts have published in recent years. Early brain tumor detection is one of the most important jobs that neurologists and radiologists have. However, it can be difficult and error-prone to manually identify and segment brain tumors from Magnetic Resonance Imaging (MRI) data. For making an early diagnosis of the condition, an automated brain tumor detection system is necessary. The model of the research paper has three classes. They are respectively Meningioma, Pituitary, Glioma. The results show that, our model achieves competitive accuracy, in terms of runtime usage of M2 10 core GPU.
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